The two discarded Atlantic Charter points remain uncertain

What were the two Atlantic Charter points that were deleted?

No one is certain, because Britain and the United States had different proposed ten-point drafts and the final eight-point text was rapidly assembled.

Both governments appear to have proposed ten-point versions, but they did not necessarily propose the same ten ideas. The charter was assembled too quickly and informally to identify a single agreed pair of deleted clauses. The short declaration is therefore interpreted as minimal diplomatic cover for a meeting primarily concerned with military alliance and coordination.